Status
The genome sequence and gene prediction of Aspergillus nidulans (teleomorph Emericella nidulans) were not determined by the JGI, but were downloaded from the Aspergillus Genome Database (AspGD) on January 13 2011. Please note that this copy of the genome is not maintained by AspGD and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to AspGD's chromosomes and proteins.
Summary statistics for the Aspergillus nidulans v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 30.48 |
| Sequencing read coverage depth | 1 |
| # of contigs | 82 |
| # of scaffolds | 8 |
| # of scaffolds >= 2Kbp | 8 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 3.76 |
| # of gaps | 74 |
| % of scaffold length in gaps | 2.2% |
| Three largest Scaffolds (Mbp) | 4.93, 4.55, 4.07 |
| Gene Models | AspGD_genes | |
| length (bp) of: | average | median |
| gene | 1733 | 1513 |
| transcript | 1551 | 1338 |
| exon | 477 | 266 |
| intron | 84 | 61 |
| description: | ||
| protein length (aa) | 485 | 412 |
| exons per gene | 3.25 | 3 |
| # of gene models | 10680 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
Nature. 2005 Dec 22;438(7071):1105-15. doi: 10.1038/nature04341
Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
Nature. 2005 Dec 22;438(7071):1105-15. doi: 10.1038/nature04341
Funding
-
