Status
The genome sequence and gene prediction of Aspergillus
oryzae were not determined by the JGI, but were downloaded from
the Aspergillus Genome Database (AspGD) on July 19 2012. Please
note that this copy of the genome is not maintained by AspGD and is
therefore not automatically updated. This copy of the genome does
not include the mitochondrial chromosome or genes. The JGI
Annotation Pipeline was used to add additional functional
annotation to AspGD's chromosomes and proteins.
Summary statistics for the Aspergillus oryzae RIB40 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 37.88 |
| Sequencing read coverage depth | 1 |
| # of contigs | 28 |
| # of scaffolds | 11 |
| # of scaffolds >= 2Kbp | 11 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 4.89 |
| # of gaps | 17 |
| % of scaffold length in gaps | 2.1% |
| Three largest Scaffolds (Mbp) | 6.52, 6.26, 5.12 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1652 | 1401 |
| transcript | 1434 | 1218 |
| exon | 482 | 272 |
| intron | 113 | 63 |
| description: | ||
| protein length (aa) | 453 | 377 |
| exons per gene | 2.98 | 3 |
| # of gene models | 12030 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H
Genome sequencing and analysis of Aspergillus oryzae.
Nature. 2005 Dec 22;438(7071):1157-61. doi: 10.1038/nature04300
Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H
Genome sequencing and analysis of Aspergillus oryzae.
Nature. 2005 Dec 22;438(7071):1157-61. doi: 10.1038/nature04300
Funding
This project was not sequenced at the JGI.
