Status
[October 2022] The Aspergillus polyporicola DTO 316-C2 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.89 |
| Sequencing read coverage depth | 55.93x |
| # of contigs | 309 |
| # of scaffolds | 282 |
| # of scaffolds >= 2Kbp | 270 |
| Scaffold N50 | 48 |
| Scaffold L50 (Mbp) | 0.23 |
| # of gaps | 27 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.19, 0.74, 0.62 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 48142 | 41808 | 86.8% |
| Ests | est.fasta | 176049446 | 173688024 | 98.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1973 | 1745 |
| transcript | 1798 | 1582 |
| exon | 552 | 337 |
| intron | 80 | 62 |
| description: | ||
| protein length (aa) | 477 | 405 |
| exons per gene | 3.25 | 3 |
| # of gene models | 12245 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
