Info • Aspergillus pseudoterreus ATCC32359 v1.0

Status

[August 2021] This genome was not sequenced or assembled at the JGI. Rather, the assembly was downloaded from NCBI on June 30, 2021 and then annotated using the JGI annotation pipeline.

Genome Assembly
Genome Assembly size (Mbp) 29.51
Sequencing read coverage depth
# of contigs 334
# of scaffolds 270
# of scaffolds >= 2Kbp 195
Scaffold N50 15
Scaffold L50 (Mbp) 0.68
# of gaps 64
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.69, 1.59, 1.32


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 12171 12149 99.8%
Ests est.fasta 538419045 384648155 71.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1885 1634
transcript 1707 1478
exon 518 300
intron 79 60
description:
protein length (aa) 495 414
exons per gene 3.30 3
# of gene models 10945


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Deng S, Dai Z, Swita M, Pomraning KR, Hofstad B, Panisko E, Baker S, Magnuson J
Deletion analysis of the itaconic acid biosynthesis gene cluster components in Aspergillus pseudoterreus ATCC32359.
Appl Microbiol Biotechnol. 2020 May;104(9):3981-3992. doi: 10.1007/s00253-020-10418-0

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.