Info • Aspergillus subauricomus CBS 638.78 v1.0

Status

[September 2016] The Aspergillus auricomus CBS 638.78 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus subauricomus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.47
Sequencing read coverage depth 72.5x
# of contigs 635
# of scaffolds 612
# of scaffolds >= 2Kbp 535
Scaffold N50 72
Scaffold L50 (Mbp) 0.16
# of gaps 23
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.65, 0.47, 0.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32974 32126 97.4%
Ests est.fasta 38661698 37509799 97.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1857 1613
transcript 1674 1446
exon 524 318
intron 86 64
description:
protein length (aa) 464 391
exons per gene 3.19 3
# of gene models 13105


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.