Info • Aspergillus transmontanensis CBS 130015 v1.0

Status

[October 2016] The Aspergillus transmontanensis CBS 130015 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus transmontanensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.34
Sequencing read coverage depth 77.5x
# of contigs 313
# of scaffolds 293
# of scaffolds >= 2Kbp 250
Scaffold N50 36
Scaffold L50 (Mbp) 0.34
# of gaps 20
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.10, 1.05, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50120 49543 98.8%
Ests est.fasta 72038214 67810971 94.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1819 1597
transcript 1630 1435
exon 516 307
intron 90 62
description:
protein length (aa) 454 381
exons per gene 3.16 3
# of gene models 14216


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.