Info • Aspergillus trinidadensis IBT 32571 v1.0

Status

[October 2019] The Aspergillus trinidadensis IBT 32571 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus trinidadensis IBT 32571 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.76
Sequencing read coverage depth 106.66x
# of contigs 1101
# of scaffolds 1077
# of scaffolds >= 2Kbp 1018
Scaffold N50 147
Scaffold L50 (Mbp) 0.07
# of gaps 24
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.74, 0.63, 0.51


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36602 35478 96.9%
Ests est.fasta 28435375 27391691 96.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1849 1623
transcript 1650 1445
exon 524 309
intron 94 66
description:
protein length (aa) 457 374
exons per gene 3.15 3
# of gene models 12066


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.