Info • Astrocystis sublimbata CBS 130006 v1.0

Status

[March 2019] The Astrocystis sublimbata CBS 130006 genome was sequenced with PacBio, assembled with Falcon v1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Astrocystis sublimbata CBS 130006 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.78
Sequencing read coverage depth 326.8x
# of contigs 212
# of scaffolds 212
# of scaffolds >= 2Kbp 209
Scaffold N50 24
Scaffold L50 (Mbp) 0.54
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.56, 1.34, 1.31


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48864 46670 95.5%
Ests est.fasta 151987625 147949583 97.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2043 1810
transcript 1841 1614
exon 591 374
intron 98 71
description:
protein length (aa) 484 400
exons per gene 3.11 3
# of gene models 12484


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.