Info • Aureobasidium pullulans NBB 7.2.1 v1.0

Status

[February 2019] The Aureobasidium pullulans NBB 7.2.1 genome was sequenced and de novo assembled by Agroscope using a combination of long reads from Pacific Biosciences Sequel technology and Illumina MiSeq short read data. Extensive polishing and manual curation resulted in a total of 12 complete chromosomes and 1 mitogenome. The nuclear assembly was subsequently annotated by JGI.

The mitochondrial genome, assembled separately, is available in the downloads section.

Summary statistics for the Aureobasidium pullulans NBB 7.2.1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.41
Sequencing read coverage depth * see Available Sequencing Data table below
# of contigs 12
# of scaffolds 12
# of scaffolds >= 2Kbp 12
Scaffold N50 5
Scaffold L50 (Mbp) 2.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.50, 3.41, 2.80

Available Sequencing Data:
Sequencing technology Sequencing facility Coverage Mean read length Mapped reads (to final Scaffolds) [%]
PacBio Sequel, 1 SMRT cell FGCZ > 5 kb: 207x
> 7 kb: 186x
> 15 kb: 130x
> 20 kb: 73x
> 25 kb: 35x
 10,126 98.61
Illumina MiSeq, 2 libraries Agroscope 29 2x 300 bp 100


Gene Models FilteredModels1
length (bp) of: average median
gene 1569 1338
transcript 1438 1212
exon 544 299
intron 81 57
description:
protein length (aa) 479 404
exons per gene 2.64 2
# of gene models 10925


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Rueda-Mejia MP, Nägeli L, Lutz S, Hayes RD, Varadarajan AR, Grigoriev IV, Ahrens CH, Freimoser FM
Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes.
Microb Cell. 2021 Aug 2;8(8):184-202. doi: 10.15698/mic2021.08.757

Funding

This project was not sequenced at the JGI.