Info • Auriscalpium vulgare FP105234-Sp v1.0

Status

Assembly v1 (Sep 2014) is a minimal draft assembly of Illumina and reads using Velvet and AllPathsLG.

Summary statistics for the Auriscalpium vulgare FP105234-Sp v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.65
Sequencing read coverage depth 122.7x
# of contigs 2195
# of scaffolds 1349
# of scaffolds >= 2Kbp 1133
Scaffold N50 110
Scaffold L50 (Mbp) 0.08
# of gaps 846
% of scaffold length in gaps 1.9%
Three largest Scaffolds (Mbp) 0.84, 0.67, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 51836 48380 93.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1594 1331
transcript 1314 1092
exon 252 154
intron 68 57
description:
protein length (aa) 378 308
exons per gene 5.22 4
# of gene models 16945


Collaborators

Laszlo Nagy, Clark University

Joseph Spatafora, Oregon State University

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Looney B, Miyauchi S, Morin E, Drula E, Courty PE, Kohler A, Kuo A, LaButti K, Pangilinan J, Lipzen A, Riley R, Andreopoulos W, He G, Johnson J, Nolan M, Tritt A, Barry KW, Grigoriev IV, Nagy LG, Hibbett D, Henrissat B, Matheny PB, Labbé J, Martin FM
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
New Phytol. 2022 Mar;233(5):2294-2309. doi: 10.1111/nph.17892

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.