Info • Auxenochlorella protothecoides UTEX 25

Status

The Auxenochlorella protothecoides UTEX 25 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on October 31, 2019. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Auxenochlorella protothecoides UTEX 25 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.22
Sequencing read coverage depth 38.0x
# of contigs 1892
# of scaffolds 217
# of scaffolds >= 2Kbp 93
Scaffold N50 12
Scaffold L50 (Mbp) 0.64
# of gaps 1675
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 2.06, 1.24, 0.98


Gene Models ExternalModels
length (bp) of: average median
gene 2704 1911
transcript 1405 1071
exon 210 149
intron 230 186
description:
protein length (aa) 467 356
exons per gene 6.68 5
# of gene models 6041


Links

Funding

This project was not sequenced at the JGI.