Info • Blumeria graminis f. sp. hordei 5874 v1.0

Status

[November 2019] The Blumeria graminis f. sp. hordei 5874 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Blumeria graminis f. sp. hordei 5874 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 110.36
Sequencing read coverage depth 88.41x
# of contigs 187
# of scaffolds 187
# of scaffolds >= 2Kbp 187
Scaffold N50 23
Scaffold L50 (Mbp) 1.38
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.52, 3.72, 3.41


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 187589 179092 95.5%
Ests est.fasta 40227857 39987867 99.4%


Gene Models FilteredModels2
length (bp) of: average median
gene 1801 1542
transcript 1646 1395
exon 565 346
intron 83 55
description:
protein length (aa) 465 374
exons per gene 2.92 3
# of gene models 7057


Collaborators

Mary Wildermuth, University of California, Berkeley.

Roger P Wise, USDA. Iowa.

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.