Info • Biscogniauxia marginata CBS 124505 v1.0

Status

[July 2019] The Biscogniauxia marginata CBS 124505 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Biscogniauxia marginata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.59
Sequencing read coverage depth 153.7x
# of contigs 401
# of scaffolds 265
# of scaffolds >= 2Kbp 254
Scaffold N50 41
Scaffold L50 (Mbp) 0.32
# of gaps 136
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.68, 1.05, 0.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51127 47603 93.1%
Ests est.fasta 162768850 158545721 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2017 1797
transcript 1822 1611
exon 601 372
intron 97 68
description:
protein length (aa) 477 400
exons per gene 3.03 3
# of gene models 11381


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.