Status
This is an updated assembly and annotation of Blumeria graminis f. sp. hordei released in 2018 by Frantzeskakis et. al. The older version of this genome can be accessed here. Please note that this copy of the genome is not maintained by Frantzeskakis et. al. and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Blumeria graminis f. sp. hordei
DH14 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 124.49 |
| Sequencing read coverage depth | |
| # of contigs | 438 |
| # of scaffolds | 318 |
| # of scaffolds >= 2Kbp | 318 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 4.57 |
| # of gaps | 120 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 9.85, 9.75, 9.11 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2262 | 1972 |
| transcript | 2112 | 1843 |
| exon | 714 | 433 |
| intron | 79 | 55 |
| description: | ||
| protein length (aa) | 475 | 383 |
| exons per gene | 2.96 | 3 |
| # of gene models | 7118 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Frantzeskakis L, Kracher B, Kusch S, Yoshikawa-Maekawa M, Bauer S, Pedersen C, Spanu PD, Maekawa T, Schulze-Lefert P, Panstruga R
Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen.
BMC Genomics. 2018 May 22;19(1):381. doi: 10.1186/s12864-018-4750-6
Frantzeskakis L, Kracher B, Kusch S, Yoshikawa-Maekawa M, Bauer S, Pedersen C, Spanu PD, Maekawa T, Schulze-Lefert P, Panstruga R
Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen.
BMC Genomics. 2018 May 22;19(1):381. doi: 10.1186/s12864-018-4750-6
Funding
This project was not sequenced at the JGI.
