Info • Blumeria graminis f. sp. tritici 96224 v3.16

Status

The genome sequence and gene prediction of Blumeria graminis f. sp. tritici 96224 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on April 14, 2020. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, and 4) unsupported short models. This resulted in removal of 1,957 models from published version of the Blumeria graminis f. sp. tritici 96224 genome v3.16 and generation of the FilteredModels2 gene track. All published models are available in the ExternalModels track. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Blumeria graminis f. sp. tritici 96224 v3.16 release are below.
Genome Assembly
Genome Assembly size (Mbp) 140.80
Sequencing read coverage depth 85x
# of contigs 708
# of scaffolds 12
# of scaffolds >= 2Kbp 12
Scaffold N50 4
Scaffold L50 (Mbp) 15.59
# of gaps 696
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 19.72, 19.49, 16.23


Gene Models FilteredModels2
length (bp) of: average median
gene 1450 1175
transcript 1350 1074
exon 546 297
intron 70 55
description:
protein length (aa) 450 358
exons per gene 2.47 2
# of gene models 6425


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.