Info • Botryococcus braunii Showa v2.1

Status

The genome sequence and gene models of Botryococcus braunii Showa strain v2.1 were downloaded from Phytozome, the Joint Genome Institute (JGI) Plant genomics portal on June 11, 2018. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome. Please note that this copy of the genome is not maintained by Phytozome and is therefore not automatically updated. The latest data is available at Phytozome.

Summary statistics for the Botryococcus braunii Showa v2.1 release are below.
Genome Assembly
Genome Assembly size (Mbp) 170.20
Sequencing read coverage depth 112.6x
# of contigs 3114
# of scaffolds 983
# of scaffolds >= 2Kbp 983
Scaffold N50 99
Scaffold L50 (Mbp) 0.57
# of gaps 2131
% of scaffold length in gaps 7.3%
Three largest Scaffolds (Mbp) 2.74, 1.68, 1.50


Gene Models ExternalModels
length (bp) of: average median
gene 5369 4205
transcript 2208 1809
exon 382 180
intron 662 558
description:
protein length (aa) 353 263
exons per gene 5.79 5
# of gene models 23685


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.