Status
The Breviolum minutum (previously known as Symbiodinium minutum) genome assembly and gene models have not been determined by the JGI, but were downloaded from the Okinawa Institute of Science and Technology (OIST) on October 31, 2019. Please note that this copy of the genome is not maintained by OIST and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Breviolum minutum are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 609.48 |
| Sequencing read coverage depth | |
| # of contigs | 32083 |
| # of scaffolds | 21899 |
| # of scaffolds >= 2Kbp | 9080 |
| Scaffold N50 | 1448 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 10184 |
| % of scaffold length in gaps | 0.9% |
| Three largest Scaffolds (Mbp) | 0.81, 0.70, 0.67 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 12382 | 8236 |
| transcript | 2068 | 1533 |
| exon | 99 | 53 |
| intron | 519 | 299 |
| description: | ||
| protein length (aa) | 570 | 377 |
| exons per gene | 20.96 | 16 |
| # of gene models | 47014 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, Takeuchi T, Hisata K, Tanaka M, Fujiwara M, Hamada M, Seidi A, Fujie M, Usami T, Goto H, Yamasaki S, Arakaki N, Suzuki Y, Sugano S, Toyoda A, Kuroki Y, Fujiyama A, Medina M, Coffroth MA, Bhattacharya D, Satoh N
Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.
Curr Biol. 2013 Aug 5;23(15):1399-408. doi: 10.1016/j.cub.2013.05.062
Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, Takeuchi T, Hisata K, Tanaka M, Fujiwara M, Hamada M, Seidi A, Fujie M, Usami T, Goto H, Yamasaki S, Arakaki N, Suzuki Y, Sugano S, Toyoda A, Kuroki Y, Fujiyama A, Medina M, Coffroth MA, Bhattacharya D, Satoh N
Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.
Curr Biol. 2013 Aug 5;23(15):1399-408. doi: 10.1016/j.cub.2013.05.062
Funding
This project was not sequenced at the JGI.
