Status
[December 2022] The genome sequence of Bipolaris sorokiniana BsorND93_1 was provided by Shaobin Zhong and annotated using the JGI Annotation pipeline. The mitochondrial genome was also assembled and is available in the download section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.48 |
| Sequencing read coverage depth | Unknown |
| # of contigs | 17 |
| # of scaffolds | 17 |
| # of scaffolds >= 2Kbp | 17 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 2.21 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.79, 3.33, 3.16 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 66494 | 54088 | 81.3% |
| Ests | est.fasta | 101579005 | 99452636 | 97.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1904 | 1620 |
| transcript | 1738 | 1491 |
| exon | 608 | 381 |
| intron | 91 | 58 |
| description: | ||
| protein length (aa) | 488 | 397 |
| exons per gene | 2.86 | 2 |
| # of gene models | 11564 |
Collaborators
- Shaobin Zhong, Department of Plant Pathology, North Dakota State University.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales Pleosporaceae
- JGI EcoGroup Portals: Plant Pathogens
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
