Status
The genome of Caliciopsis orientalis was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Caliciopsis orientalis genome
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 28.17 |
| Sequencing read coverage depth | 44.34x |
| # of contigs | 2064 |
| # of scaffolds | 643 |
| # of scaffolds >= 2Kbp | 566 |
| Scaffold N50 | 111 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 1421 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 0.39, 0.30, 0.26 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1842 | 1542 |
| transcript | 1641 | 1359 |
| exon | 507 | 269 |
| intron | 92 | 63 |
| description: | ||
| protein length (aa) | 547 | 453 |
| exons per gene | 3.24 | 3 |
| # of gene models | 8494 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the JGI.
