Status
The genome of Calosphaeria pulchella was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Calosphaeria pulchella genome
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 37.80 |
Sequencing read coverage depth | 75x |
# of contigs | 5425 |
# of scaffolds | 2010 |
# of scaffolds >= 2Kbp | 1278 |
Scaffold N50 | 173 |
Scaffold L50 (Mbp) | 0.06 |
# of gaps | 3415 |
% of scaffold length in gaps | 1.7% |
Three largest Scaffolds (Mbp) | 0.49, 0.25, 0.24 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1795 | 1504 |
transcript | 1526 | 1284 |
exon | 484 | 262 |
intron | 127 | 78 |
description: | ||
protein length (aa) | 509 | 428 |
exons per gene | 3.15 | 3 |
# of gene models | 10200 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the JGI.