Info • Candida boidinii NRRL Y-2332

Status

The genome of Candida boidinii NRRL Y-2332 was sequenced using Illumina HiSeq 2500 and assembled using DISCOVAR v. 51885, SPAdes v. 3.5.1, and MASURCA v. 3. Please note that this copy of the genome is not maintained by Antonis Rokas or the publication authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Candida boidinii NRRL Y-2332 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.28
Sequencing read coverage depth 30x
# of contigs 720
# of scaffolds 704
# of scaffolds >= 2Kbp 192
Scaffold N50 21
Scaffold L50 (Mbp) 0.28
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.40, 0.89, 0.63


Gene Models ExternalModels
length (bp) of: average median
gene 1870 1503
transcript 1601 1272
exon 1025 663
intron 480 274
description:
protein length (aa) 534 424
exons per gene 1.56 1
# of gene models 6230


Collaborators

Kenneth H Wolfe, University College Dublin, Ireland.

Antonis Rokas, Vanderbilt University, U.S.A.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.
Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7

Funding

This project was not sequenced at the JGI.