Info • Candida dubliniensis CD36

Status

The genome sequence and gene models of Candida dubliniensis CD36 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Candida dubliniensis CD36 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.62
Sequencing read coverage depth
# of contigs 8
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 3
Scaffold L50 (Mbp) 2.27
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.21, 2.29, 2.27


Gene Models ExternalModels
length (bp) of: average median
gene 1534 1275
transcript 1523 1272
exon 1431 1191
intron 160 90
description:
protein length (aa) 508 424
exons per gene 1.06 1
# of gene models 5860


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Jackson AP, Gamble JA, Yeomans T, Moran GP, Saunders D, Harris D, Aslett M, Barrell JF, Butler G, Citiulo F, Coleman DC, de Groot PW, Goodwin TJ, Quail MA, McQuillan J, Munro CA, Pain A, Poulter RT, Rajandream MA, Renauld H, Spiering MJ, Tivey A, Gow NA, Barrell B, Sullivan DJ, Berriman M
Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans.
Genome Res. 2009 Dec;19(12):2231-44. doi: 10.1101/gr.097501.109

Funding

This project was not sequenced at the JGI.