Status
The genome sequence and gene models of Ceraceosorus bombacis ATCC 22867 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 26.09 |
| Sequencing read coverage depth | 210x |
| # of contigs | 5549 |
| # of scaffolds | 485 |
| # of scaffolds >= 2Kbp | 83 |
| Scaffold N50 | 12 |
| Scaffold L50 (Mbp) | 0.82 |
| # of gaps | 5064 |
| % of scaffold length in gaps | 6.6% |
| Three largest Scaffolds (Mbp) | 1.62, 1.51, 1.33 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1882 | 1590 |
| transcript | 1493 | 1170 |
| exon | 370 | 197 |
| intron | 131 | 85 |
| description: | ||
| protein length (aa) | 498 | 390 |
| exons per gene | 4.03 | 3 |
| # of gene models | 8022 |
Collaborators
- Marco Thines, Goethe University
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Sharma R, Xia X, Riess K, Bauer R, Thines M
Comparative Genomics Including the Early-Diverging Smut Fungus Ceraceosorus bombacis Reveals Signatures of Parallel Evolution within Plant and Animal Pathogens of Fungi and Oomycetes.
Genome Biol Evol. 2015 Aug 27;7(9):2781-98. doi: 10.1093/gbe/evv162
Sharma R, Xia X, Riess K, Bauer R, Thines M
Comparative Genomics Including the Early-Diverging Smut Fungus Ceraceosorus bombacis Reveals Signatures of Parallel Evolution within Plant and Animal Pathogens of Fungi and Oomycetes.
Genome Biol Evol. 2015 Aug 27;7(9):2781-98. doi: 10.1093/gbe/evv162
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Ustilaginomycotina
Funding
This project was not sequenced at the JGI.
