Info • Cryptococcus gattii VGII 2001/935-1

Status

The genome sequence and gene models of Cryptococcus gattii VGII 2001/935-1 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 17.57
Sequencing read coverage depth 90.0x
# of contigs 94
# of scaffolds 24
# of scaffolds >= 2Kbp 21
Scaffold N50 6
Scaffold L50 (Mbp) 1.25
# of gaps 70
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 2.15, 1.99, 1.95


Gene Models ExternalModels
length (bp) of: average median
gene 1845 1562
transcript 1484 1236
exon 252 148
intron 76 58
description:
protein length (aa) 493 411
exons per gene 5.90 5
# of gene models 6495


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Farrer RA, Desjardins CA, Sakthikumar S, Gujja S, Saif S, Zeng Q, Chen Y, Voelz K, Heitman J, May RC, Fisher MC, Cuomo CA
Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii.
mBio. 2015 Sep 1;6(5):e00868-15. doi: 10.1128/mBio.00868-15

Funding

This project was not sequenced at the JGI.