Info • Chaetomium globosum MPI-SDFR-AT-0079 v1.0

Status

[June 2019] The Chaetomium globosum MPI-SDFR-AT-0079 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Chaetomium globosum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.15
Sequencing read coverage depth 230.27x
# of contigs 9
# of scaffolds 9
# of scaffolds >= 2Kbp 9
Scaffold N50 4
Scaffold L50 (Mbp) 4.90
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.56, 5.35, 4.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43945 40727 92.7%
Ests est.fasta 250122899 248104927 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1916 1623
transcript 1717 1446
exon 577 354
intron 103 68
description:
protein length (aa) 487 392
exons per gene 2.98 2
# of gene models 11569


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.