Status
The genome of Chaetosphaeria innumera was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Chaetosphaeria innumera genome
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 37.69 |
Sequencing read coverage depth | 60.93x |
# of contigs | 2359 |
# of scaffolds | 706 |
# of scaffolds >= 2Kbp | 600 |
Scaffold N50 | 92 |
Scaffold L50 (Mbp) | 0.12 |
# of gaps | 1653 |
% of scaffold length in gaps | 0.5% |
Three largest Scaffolds (Mbp) | 0.64, 0.53, 0.51 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1784 | 1482 |
transcript | 1557 | 1305 |
exon | 505 | 269 |
intron | 111 | 69 |
description: | ||
protein length (aa) | 519 | 435 |
exons per gene | 3.08 | 3 |
# of gene models | 11496 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the
JGI.