Info • Chalara longipes BDJ v1.0

Status

Assembly v1 (April 2013) is a standard draft assembly of Solexa gDNA reads. A total of 54 scaffolds and 52.4 Mbp were assembled using AllPathsLG.

Summary statistics for the Chalara longipes BDJ v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 52.43
Sequencing read coverage depth 104.7x
# of contigs 175
# of scaffolds 54
# of scaffolds >= 2Kbp 41
Scaffold N50 9
Scaffold L50 (Mbp) 2.69
# of gaps 121
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 3.39, 3.26, 3.22


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 47759 44984 94.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1646 1418
transcript 1483 1269
exon 485 306
intron 81 56
description:
protein length (aa) 442 368
exons per gene 3.06 3
# of gene models 19765


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.