Info • Chaetoceros tenuissimus NIES-3715

Status

The Chaetoceros tenuissimus NIES-3715 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on March 6, 2023. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 1,449 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 41.00
Sequencing read coverage depth 150x
# of contigs 105
# of scaffolds 85
# of scaffolds >= 2Kbp 83
Scaffold N50 7
Scaffold L50 (Mbp) 2.43
# of gaps 20
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.46, 3.79, 3.68


Gene Models FilteredModels1
length (bp) of: average median
gene 1623 1280
transcript 1535 1215
exon 854 675
intron 112 81
description:
protein length (aa) 512 405
exons per gene 1.80 1
# of gene models 17253


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.