Info • Chaetomium thermophilum var thermophilum DSM 1495

Status

The genome sequence and gene prediction of Chaetomium thermophilum var thermophilum DSM 1495 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on October 31, 2018. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Chaetomium thermophilum var thermophilum DSM 1495 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.32
Sequencing read coverage depth
# of contigs 52
# of scaffolds 21
# of scaffolds >= 2Kbp 17
Scaffold N50 4
Scaffold L50 (Mbp) 2.85
# of gaps 31
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.91, 3.46, 3.12


Gene Models FilteredModels1
length (bp) of: average median
gene 1854 1523
transcript 1637 1344
exon 558 277
intron 114 69
description:
protein length (aa) 546 448
exons per gene 2.93 3
# of gene models 7066


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amlacher S, Sarges P, Flemming D, van Noort V, Kunze R, Devos DP, Arumugam M, Bork P, Hurt E
Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile.
Cell. 2011 Jul 22;146(2):277-89. doi: 10.1016/j.cell.2011.06.039

Bock T, Chen WH, Ori A, Malik N, Silva-Martin N, Huerta-Cepas J, Powell ST, Kastritis PL, Smyshlyaev G, Vonkova I, Kirkpatrick J, Doerks T, Nesme L, Baßler J, Kos M, Hurt E, Carlomagno T, Gavin AC, Barabas O, Müller CW, van Noort V, Beck M, Bork P
An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum.
Nucleic Acids Res. 2014 Dec 16;42(22):13525-33. doi: 10.1093/nar/gku1147

Funding

This project was not sequenced at the JGI.