Info • Cochliobolus heterostrophus Hm338 v1.0

Status

[March 2021] The Cochliobolus heterostrophus Hm338 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 45.26
Sequencing read coverage depth 238.38x
# of contigs 133
# of scaffolds 133
# of scaffolds >= 2Kbp 133
Scaffold N50 9
Scaffold L50 (Mbp) 2.13
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.64, 3.42, 2.81


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 607255 525144 86.5%
Ests est.fasta 47389466 47077229 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1742 1506
transcript 1584 1368
exon 555 339
intron 87 58
description:
protein length (aa) 472 397
exons per gene 2.85 2
# of gene models 12842


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Haridas Sajeet, González Jennifer B., Riley Robert, Koriabine Maxim, Yan Mi, Ng Vivian, Rightmyer Adriana, Grigoriev Igor V., Baker Scott E., Turgeon B. Gillian
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
mBio. 2023;: doi: 10.1128/mbio.00261-23

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.