Info • Cochliobolus heterostrophus PR1x412 v2.0

Status

[July 2021] The Cochliobolus heterostrophus PR1x412 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 41.32
Sequencing read coverage depth 190.27x
# of contigs 67
# of scaffolds 67
# of scaffolds >= 2Kbp 67
Scaffold N50 7
Scaffold L50 (Mbp) 2.24
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.52, 3.50, 3.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 607255 524413 86.4%
Ests est.fasta 47389466 47005013 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1782 1531
transcript 1610 1386
exon 557 336
intron 93 58
description:
protein length (aa) 482 404
exons per gene 2.89 2
# of gene models 11792


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Haridas Sajeet, González Jennifer B., Riley Robert, Koriabine Maxim, Yan Mi, Ng Vivian, Rightmyer Adriana, Grigoriev Igor V., Baker Scott E., Turgeon B. Gillian
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
mBio. 2023;: doi: 10.1128/mbio.00261-23

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.