Info • Chlamydomonas priscuii UWO241


The Chlamydomonas priscuii UWO241 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on July 30, 2021. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, and 4) unsupported short models. This resulted in the removal of 1264 models from Chlamydomonas priscuii UWO241 and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 211.64
Sequencing read coverage depth 65x
# of contigs 2743
# of scaffolds 2458
# of scaffolds >= 2Kbp 2030
Scaffold N50 164
Scaffold L50 (Mbp) 0.38
# of gaps 285
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 1.81, 1.58, 1.58

Gene Models FilteredModels1
length (bp) of: average median
gene 8799 4782
transcript 1646 1179
exon 185 119
intron 908 613
protein length (aa) 549 393
exons per gene 8.89 6
# of gene models 14754

Genome Reference(s)


This project was not sequenced at the JGI.