Info • Chlorokybus atmophyticus CCAC 0220
Please note that this organism is for archival use only. Please see the current Chlorokybus atmophyticus CCAC 0220 site for the latest data and information.

Status

The Chlorokybus atmophyticus CCAC 0220 genome assembly and gene models have not been determined by the JGI, but were downloaded from the CNGB Nucleotide Sequence Archive (accession CNP0000228) on July 21, 2020. Please note that this copy of the genome is not maintained by CNGB and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Chlorokybus atmophyticus CCAC 0220 release are below.
Genome Assembly
Genome Assembly size (Mbp) 74.34
Sequencing read coverage depth
# of contigs 6220
# of scaffolds 3836
# of scaffolds >= 2Kbp 399
Scaffold N50 30
Scaffold L50 (Mbp) 0.75
# of gaps 2384
% of scaffold length in gaps 2.5%
Three largest Scaffolds (Mbp) 2.71, 1.99, 1.98


Gene Models ExternalModels
length (bp) of: average median
gene 2555 2201
transcript 1384 1119
exon 172 127
intron 168 110
description:
protein length (aa) 461 373
exons per gene 8.03 7
# of gene models 9300


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Wang S, Li L, Li H, Sahu SK, Wang H, Xu Y, Xian W, Song B, Liang H, Cheng S, Chang Y, Song Y, Çebi Z, Wittek S, Reder T, Peterson M, Yang H, Wang J, Melkonian B, Van de Peer Y, Xu X, Wong GK, Melkonian M, Liu H, Liu X
Genomes of early-diverging streptophyte algae shed light on plant terrestrialization.
Nat Plants. 2020 Feb;6(2):95-106. doi: 10.1038/s41477-019-0560-3

Funding

This project was not sequenced at the JGI.