Info • Chlamydomonas eustigma NIES-2499
Please note that this organism is for archival use only. Please see the current Chlamydomonas eustigma NIES-2499 site for the latest data and information.

Status

The Chlamydomonas eustigma NIES-2499 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on October 31, 2019. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Chlamydomonas eustigma NIES-2499 release are below.
Genome Assembly
Genome Assembly size (Mbp) 66.61
Sequencing read coverage depth
# of contigs 2323
# of scaffolds 519
# of scaffolds >= 2Kbp 519
Scaffold N50 42
Scaffold L50 (Mbp) 0.47
# of gaps 1804
% of scaffold length in gaps 2.5%
Three largest Scaffolds (Mbp) 2.08, 1.30, 1.27


Gene Models ExternalModels
length (bp) of: average median
gene 3653 2660
transcript 1744 1281
exon 209 135
intron 262 214
description:
protein length (aa) 581 427
exons per gene 8.35 7
# of gene models 14061


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hirooka S, Hirose Y, Kanesaki Y, Higuchi S, Fujiwara T, Onuma R, Era A, Ohbayashi R, Uzuka A, Nozaki H, Yoshikawa H, Miyagishima SY
Acidophilic green algal genome provides insights into adaptation to an acidic environment.
Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):E8304-E8313. doi: 10.1073/pnas.1707072114

Funding

This project was not sequenced at the JGI.