Info • Chlorella sorokiniana str. 1228

Status

The Chlorella sorokiniana strain 1228 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on October 31, 2019. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Chlorella sorokiniana str. 1228 release are below.
Genome Assembly
Genome Assembly size (Mbp) 61.39
Sequencing read coverage depth 85x
# of contigs 64
# of scaffolds 64
# of scaffolds >= 2Kbp 64
Scaffold N50 10
Scaffold L50 (Mbp) 2.42
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.57, 3.96, 3.72


Gene Models ExternalModels
length (bp) of: average median
gene 3682 2819
transcript 1576 1248
exon 152 101
intron 228 188
description:
protein length (aa) 524 414
exons per gene 10.34 8
# of gene models 12169


Links

Funding

This project was not sequenced at the JGI.