Status
The Chlorella sorokiniana strain 1228 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on October 31, 2019. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Chlorella sorokiniana str. 1228
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 61.39 |
Sequencing read coverage depth | 85x |
# of contigs | 64 |
# of scaffolds | 64 |
# of scaffolds >= 2Kbp | 64 |
Scaffold N50 | 10 |
Scaffold L50 (Mbp) | 2.42 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 4.57, 3.96, 3.72 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 3682 | 2819 |
transcript | 1576 | 1248 |
exon | 152 | 101 |
intron | 228 | 188 |
description: | ||
protein length (aa) | 524 | 414 |
exons per gene | 10.34 | 8 |
# of gene models | 12169 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hovde Blake T., Hanschen Erik R., Steadman Tyler Christina R., Lo Chien-Chi, Kunde Yuliya, Davenport Karen, Daligault Hajnalka, Msanne Joseph, Canny Stephanie, Eyun Seong-il, Riethoven Jean-Jack M., Polle Juergen, Starkenburg Shawn R.
Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)
Algal Research. 2018;35:449-461. doi: 10.1016/j.algal.2018.09.012
Hovde Blake T., Hanschen Erik R., Steadman Tyler Christina R., Lo Chien-Chi, Kunde Yuliya, Davenport Karen, Daligault Hajnalka, Msanne Joseph, Canny Stephanie, Eyun Seong-il, Riethoven Jean-Jack M., Polle Juergen, Starkenburg Shawn R.
Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)
Algal Research. 2018;35:449-461. doi: 10.1016/j.algal.2018.09.012
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Chlorophyta Trebouxiophyceae
Funding
This project was not sequenced at the JGI.