Info • Chlorella sorokiniana UTEX 1230

Status

The Chlorella sorokiniana strain UTEX 1230 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on October 31, 2019. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Chlorella sorokiniana UTEX 1230 release are below.
Genome Assembly
Genome Assembly size (Mbp) 58.53
Sequencing read coverage depth 38x
# of contigs 22
# of scaffolds 20
# of scaffolds >= 2Kbp 20
Scaffold N50 7
Scaffold L50 (Mbp) 4.09
# of gaps 2
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.12, 4.73, 4.35


Gene Models ExternalModels
length (bp) of: average median
gene 3754 2902
transcript 1649 1302
exon 152 101
intron 215 186
description:
protein length (aa) 544 428
exons per gene 10.88 8
# of gene models 12871


Links

Funding

This project was not sequenced at the JGI.