Info • Chlorella sorokiniana UTEX 1230

Status

The Chlorella sorokiniana strain UTEX 1230 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on October 31, 2019. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 662 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 58.53
Sequencing read coverage depth 38x
# of contigs 22
# of scaffolds 20
# of scaffolds >= 2Kbp 20
Scaffold N50 7
Scaffold L50 (Mbp) 4.09
# of gaps 2
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.12, 4.73, 4.35


Gene Models FilteredModels1
length (bp) of: average median
gene 3836 2976
transcript 1680 1332
exon 149 101
intron 212 186
description:
protein length (aa) 554 439
exons per gene 11.24 9
# of gene models 12209


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.