Status
The Chlorella sorokiniana UTEX 1602 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on October 13, 2019. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome. The mitochondrial genome is also available in the downloads section.
Summary statistics for the Chlorella sorokiniana UTEX 1602
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 59.37 |
Sequencing read coverage depth | 56.0x |
# of contigs | 157 |
# of scaffolds | 157 |
# of scaffolds >= 2Kbp | 156 |
Scaffold N50 | 9 |
Scaffold L50 (Mbp) | 2.59 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 4.19, 4.10, 3.79 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 5495 | 3988 |
transcript | 2194 | 1682 |
exon | 144 | 100 |
intron | 234 | 184 |
description: | ||
protein length (aa) | 656 | 484 |
exons per gene | 15.21 | 11 |
# of gene models | 10384 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Arriola MB, Velmurugan N, Zhang Y, Plunkett MH, Hondzo H, Barney BM
Genome sequences of Chlorella sorokiniana UTEX 1602 and Micractinium conductrix SAG 241.80: implications to maltose excretion by a green alga.
Plant J. 2018 Feb;93(3):566-586. doi: 10.1111/tpj.13789
Arriola MB, Velmurugan N, Zhang Y, Plunkett MH, Hondzo H, Barney BM
Genome sequences of Chlorella sorokiniana UTEX 1602 and Micractinium conductrix SAG 241.80: implications to maltose excretion by a green alga.
Plant J. 2018 Feb;93(3):566-586. doi: 10.1111/tpj.13789
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Chlorophyta Trebouxiophyceae
Funding
This project was not sequenced at the JGI.