Info • Chlorella sorokiniana UTEX 1602

Status

The Chlorella sorokiniana UTEX 1602 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on October 13, 2019. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 1,139 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 59.37
Sequencing read coverage depth 56.0x
# of contigs 157
# of scaffolds 157
# of scaffolds >= 2Kbp 156
Scaffold N50 9
Scaffold L50 (Mbp) 2.59
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.19, 4.10, 3.79


Gene Models FilteredModels1
length (bp) of: average median
gene 5333 3936
transcript 2162 1673
exon 145 101
intron 231 183
description:
protein length (aa) 646 482
exons per gene 14.87 11
# of gene models 9245


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.