Info • Chlamydomonas schloesseri CCAP 11/173

Status

The Chlamydomonas schloesseri CCAP 11/173 genome sequence and gene models were not determined by the JGI, but were provided by Rory Craig in July 2020. Please note that this copy of the genome is not maintained by Rory Craig and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

The genome was sequenced with Illumina and PacBio, assembled by Canu, and polished by arrow and pilon. Gene prediction was performed with braker2.

Summary statistics for the Chlamydomonas schloesseri CCAP 11/173 release are below.
Genome Assembly
Genome Assembly size (Mbp) 130.20
Sequencing read coverage depth 47.46x PacBio, 70.95x Illumina
# of contigs 457
# of scaffolds 457
# of scaffolds >= 2Kbp 455
Scaffold N50 30
Scaffold L50 (Mbp) 1.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.46, 4.24, 4.00


Gene Models ExternalModels
length (bp) of: average median
gene 6081 4742
transcript 3286 2491
exon 330 152
intron 315 244
description:
protein length (aa) 809 541
exons per gene 9.95 8
# of gene models 16268


Collaborators

 

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Craig RJ, Hasan AR, Ness RW, Keightley PD
Comparative genomics of Chlamydomonas.
Plant Cell. 2021 May 31;33(4):1016-1041. doi: 10.1093/plcell/koab026

Funding

This project was not sequenced at the JGI.