Info • Chondrus crispus Stackhouse

Status

The genome sequence and gene models of Chondrus crispus have not been determined by the JGI, but were downloaded from NCBI, on March 27, 2018. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Chondrus crispus release are below.
Genome Assembly
Genome Assembly size (Mbp) 104.98
Sequencing read coverage depth 14x
# of contigs 3065
# of scaffolds 926
# of scaffolds >= 2Kbp 926
Scaffold N50 126
Scaffold L50 (Mbp) 0.24
# of gaps 2139
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 1.17, 1.03, 0.96


Gene Models ExternalModels
length (bp) of: average median
gene 1238 984
transcript 1184 933
exon 698 390
intron 80 2
description:
protein length (aa) 351 259
exons per gene 1.70 1
# of gene models 9808


Genome Reference(s)

Funding

This project was not sequenced at the JGI.