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Info • Chromera velia CCMP2878

Status

The Chromera velia CCMP2878 genome assembly and gene models have not been determined by the JGI, but were downloaded from CryptoDB release 45 on October 31, 2019. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. Please note that this copy of the genome is not maintained by CryptoDB and is therefore not automatically updated.

We applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, and 4) unsupported short models. This resulted in removal of 7,635 models from C. velia and generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 193.89
Sequencing read coverage depth
# of contigs 8560
# of scaffolds 5966
# of scaffolds >= 2Kbp 5668
Scaffold N50 1053
Scaffold L50 (Mbp) 0.06
# of gaps 2594
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 0.30, 0.28, 0.26


Gene Models FilteredModels1
length (bp) of: average median
gene 5045 3741
transcript 2727 1989
exon 482 179
intron 500 372
description:
protein length (aa) 612 433
exons per gene 5.65 4
# of gene models 24133


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.