Info • Chromochloris zofingiensis SAG 211-14 v5.0


The genome sequence and gene models of Chromochloris zofingiensis SAG 211-14 were not determined by the Joint Genome Institute (JGI), but were downloaded from on Dec. 7, 2018 (v5.2.3.2). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into JGI Genome Portal. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by UCLA or the publication authors and is therefore not automatically updated. Mitochondrial and chloroplast assemblies are also available in the downloads section.

Summary statistics for the Chromochloris zofingiensis release are below.
Genome Assembly
Genome Assembly size (Mbp) 60.13
Sequencing read coverage depth
# of contigs 217
# of scaffolds 217
# of scaffolds >= 2Kbp 183
Scaffold N50 8
Scaffold L50 (Mbp) 3.27
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.70, 4.23, 4.11

Gene Models ExternalModels
length (bp) of: average median
gene 2504 1865
transcript 1447 1041
exon 291 194
intron 269 262
protein length (aa) 482 347
exons per gene 4.97 4
# of gene models 15274

Genome Reference(s)


This project was not sequenced at the JGI.