Status
The genome sequence and gene prediction of Clavariopsis aquatica WDA-00-1 have not been determined by the Joint Genome Institute (JGI), but were provided by Felix Heeger. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. All models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by Felix Heeger and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Genome Assembly | |
Genome Assembly size (Mbp) | 34.19 |
Sequencing read coverage depth | Unknown |
# of contigs | 2659 |
# of scaffolds | 2650 |
# of scaffolds >= 2Kbp | 1962 |
Scaffold N50 | 342 |
Scaffold L50 (Mbp) | 0.03 |
# of gaps | 9 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.17, 0.14, 0.13 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1971 | 1693 |
transcript | 1486 | 1233 |
exon | 495 | 271 |
intron | 85 | 58 |
description: | ||
protein length (aa) | 495 | 411 |
exons per gene | 3.00 | 3 |
# of gene models | 11608 |
Collaborators
- Felix Heeger, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Bundesanstalt für Materialforschung und -prüfung, Germany
Genome Reference(s)
Heeger F, Bourne EC, Wurzbacher C, Funke E, Lipzen A, He G, Ng V, Grigoriev IV, Schlosser D, Monaghan MT
Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica.
J Fungi (Basel). 2021 Oct 12;7(10):. doi: 10.3390/jof7100854
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes