Info • Cladophialophora carrionii CBS 160.54

Status

Cladophialophora carrionii was sequenced by the Broad Institute as part of the black yeast comparative genomics project. The genome and gene models of Cladophialophora carrionii were downloaded from NCBI on June 1, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI or the Broad Institute and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

 

Summary statistics for the Cladophialophora carrionii release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.99
Sequencing read coverage depth
# of contigs 45
# of scaffolds 19
# of scaffolds >= 2Kbp 16
Scaffold N50 4
Scaffold L50 (Mbp) 3.20
# of gaps 26
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.73, 3.63, 3.49


Gene Models ExternalModels
length (bp) of: average median
gene 1563 1366
transcript 1472 1278
exon 661 358
intron 76 59
description:
protein length (aa) 491 426
exons per gene 2.23 2
# of gene models 10373


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patané JS, Priest M, Souza R, Young S, Ferreira KS, Zeng Q, da Cunha MM, Gladki A, Barker B, Vicente VA, de Souza EM, Almeida S, Henrissat B, Vasconcelos AT, Deng S, Voglmayr H, Moussa TA, Gorbushina A, Felipe MS, Cuomo CA, de Hoog GS
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).
Stud Mycol. 2017 Mar;86():1-28. doi: 10.1016/j.simyco.2017.01.001

Funding

This project was not sequenced at the JGI.