Status
[February 2024] The Cladophialophora sp. E105-34 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 46.85 |
| Sequencing read coverage depth | 65.69x |
| # of contigs | 423 |
| # of scaffolds | 374 |
| # of scaffolds >= 2Kbp | 281 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 1.40 |
| # of gaps | 49 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.21, 3.81, 3.79 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 51005 | 49721 | 97.5% |
| Ests | est.fasta | 193448569 | 191104216 | 98.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1809 | 1636 |
| transcript | 1683 | 1526 |
| exon | 632 | 378 |
| intron | 78 | 58 |
| description: | ||
| protein length (aa) | 475 | 416 |
| exons per gene | 2.66 | 2 |
| # of gene models | 18172 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Chaetothyriomycetidae Chaetothyriales Herpotrichiellaceae
- JGI EcoGroup Portals: Endophytic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
