Info • Cladocopium goreaui SCF055-01



The Cladocopium goreaui SCF055-01 (previously known as Symbiodinium goreaui) genome assembly and gene models have not been determined by the JGI, but were downloaded from the the ReFuGe 2020 Consortium on 16th of July 2020. Please note that this copy of the genome is not maintained by ReFuGe 2020 Consortium and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Cladocopium goreaui SCF055 are below.
Genome Assembly
Genome Assembly size (Mbp) 1027.79
Sequencing read coverage depth
# of contigs 226588
# of scaffolds 41289
# of scaffolds >= 2Kbp 25542
Scaffold N50 2825
Scaffold L50 (Mbp) 0.10
# of gaps 185299
% of scaffold length in gaps 13.1%
Three largest Scaffolds (Mbp) 8.34, 7.34, 5.52

Gene Models ExternalModels
length (bp) of: average median
gene 6967 3762
transcript 1766 1203
exon 176 66
intron 577 270
protein length (aa) 589 401
exons per gene 10.04 6
# of gene models 35913

Genome Reference(s)



This project was not sequenced at the JGI.