Info • Cladosiphon okamuranus S strain


The Cladosiphon okamuranus S strain genome assembly and gene models have not been determined by the JGI, but were downloaded from the Okinawa Institute of Science and Technology (OIST) on October 31, 2019. Please note that this copy of the genome is not maintained by OIST and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Cladosiphon okamuranus release are below.
Genome Assembly
Genome Assembly size (Mbp) 169.73
Sequencing read coverage depth
# of contigs 3835
# of scaffolds 732
# of scaffolds >= 2Kbp 732
Scaffold N50 77
Scaffold L50 (Mbp) 0.51
# of gaps 3103
% of scaffold length in gaps 1.7%
Three largest Scaffolds (Mbp) 7.34, 6.33, 4.40

Gene Models ExternalModels
length (bp) of: average median
gene 8325 6229
transcript 2472 1773
exon 218 141
intron 567 426
protein length (aa) 754 520
exons per gene 11.36 9
# of gene models 14750

Genome Reference(s)


This project was not sequenced at the JGI.