Status
[December 2023] The Clonostachys rosea 406A_c4.1 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 54.70 |
| Sequencing read coverage depth | 107.52x |
| # of contigs | 391 |
| # of scaffolds | 374 |
| # of scaffolds >= 2Kbp | 322 |
| Scaffold N50 | 19 |
| Scaffold L50 (Mbp) | 0.76 |
| # of gaps | 17 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.17, 2.83, 2.80 |
RNA data showed contamination, leading to reduced mapping rates seen below.
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 73512 | 49228 | 67.0% |
| Ests | est.fasta | 123425062 | 91892868 | 74.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1862 | 1607 |
| transcript | 1678 | 1461 |
| exon | 551 | 336 |
| intron | 92 | 64 |
| description: | ||
| protein length (aa) | 491 | 413 |
| exons per gene | 3.05 | 3 |
| # of gene models | 18114 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
