Info • Cochliobolus heterostrophus C5 v3.0

Status

[May 2021] The Cochliobolus heterostrophus C5 v3.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 36.48
Sequencing read coverage depth 8.96x
# of contigs 53
# of scaffolds 53
# of scaffolds >= 2Kbp 48
Scaffold N50 6
Scaffold L50 (Mbp) 2.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.76, 3.55, 3.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 607255 527957 86.9%
Ests est.fasta 47389466 47049087 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1715 1490
transcript 1560 1349
exon 557 333
intron 88 59
description:
protein length (aa) 471 396
exons per gene 2.80 2
# of gene models 11808


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Haridas Sajeet, González Jennifer B., Riley Robert, Koriabine Maxim, Yan Mi, Ng Vivian, Rightmyer Adriana, Grigoriev Igor V., Baker Scott E., Turgeon B. Gillian
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
mBio. 2023;: doi: 10.1128/mbio.00261-23

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.